[greenstone-users] REMOTE GREENSTONE ERROR - Can't Create or Open Collections

From Jonah Langenbeck
DateFri Feb 8 04:15:40 2008
Subject [greenstone-users] REMOTE GREENSTONE ERROR - Can't Create or Open Collections
In-Reply-To (2969-68-105-140-115-1202162773-squirrel-webmail-scms-waikato-ac-nz)
Skipped content of type multipart/alternative-------------- next part --------------
Kandinsky:gli-client-2.80 jonahlangenbeck$ sh client-gli.sh -debug

Greenstone Librarian Interface (GLI)
Copyright (C) 2006, New Zealand Digital Library Project, University Of Waikato
GLI comes with ABSOLUTELY NO WARRANTY; for details see LICENSE.txt
This is free software, and you are welcome to redistribute it

Checking Java: /usr/bin/java

Running the Greenstone Librarian Interface...
Version: 2.80

Debug file path: /Users/jonahlangenbeck/.gli/debug7-1-2008.txt
-- listing properties --
java.runtime.name=Java(TM) 2 Runtime Environment, Stand...
sun.boot.library.path=/System/Library/Frameworks/JavaVM.fra...
java.vm.version=1.5.0_13-119
awt.nativeDoubleBuffering=true
gopherProxySet=false
java.util.prefs.syncInterval=2000000
java.vm.vendor=Apple Inc.
java.vendor.url=http://www.apple.com/
path.separator=:
java.vm.name=Java HotSpot(TM) Client VM
file.encoding.pkg=sun.io
user.country=US
sun.java.launcher=SUN_STANDARD
sun.os.patch.level=unknown
java.vm.specification.name=Java Virtual Machine Specification
user.dir=/Applications/gli-client-2.80
java.runtime.version=1.5.0_13-b05-237
java.awt.graphicsenv=apple.awt.CGraphicsEnvironment
java.endorsed.dirs=/System/Library/Frameworks/JavaVM.fra...
os.arch=i386
java.io.tmpdir=/tmp
line.separator=

java.vm.specification.vendor=Sun Microsystems Inc.
os.name=Mac OS X
sun.jnu.encoding=MacRoman
java.library.path=.:/Library/Java/Extensions:/System/Li...
java.specification.name=Java Platform API Specification
java.class.version=49.0
sun.management.compiler=HotSpot Client Compiler
os.version=10.5
user.home=/Users/jonahlangenbeck
user.timezone=America/Chicago
java.awt.printerjob=apple.awt.CPrinterJob
file.encoding=MacRoman
java.specification.version=1.5
user.name=jonahlangenbeck
java.class.path=classes/:GLI.jar:lib/apache.jar:lib/q...
apple.awt.graphics.UseQuartz=false
java.vm.specification.version=1.0
sun.arch.data.model=32
java.home=/System/Library/Frameworks/JavaVM.fra...
java.specification.vendor=Sun Microsystems Inc.
user.language=en
awt.toolkit=apple.awt.CToolkit
java.vm.info=mixed mode, sharing
java.version=1.5.0_13
java.ext.dirs=/Library/Java/Extensions:/System/Libr...
sun.boot.class.path=/System/Library/Frameworks/JavaVM.fra...
java.vendor=Apple Inc.
file.separator=/
java.vendor.url.bug=http://bugreport.apple.com/
sun.cpu.endian=little
sun.io.unicode.encoding=UnicodeLittle
mrj.version=1040.1.5.0_13-237
sun.cpu.isalist=
sun.awt.exception.handler=apple.awt.CToolkit$EventQueueExceptio...
Java vendor: Apple Inc.
Note that the Librarian Interface has been developed and tested with Java from Sun Microsystems.
Configuration.library_url = http://129.81.233.4/cgi-bin/library
Configuration.gliserver_url = http://129.81.233.4/cgi-bin/gliserver.pl
Not checking for ImageMagick.
Not checking for perl path/exe
FileQueue started.
Deleting user's local collect directory...
Done.
Unmapping recycle...
In loadClassifiersList()...
Waiting for action to complete...
Getting options for classinfo.pl...
Waiting for action to complete...
Waiting for action to complete...
Waiting for action to complete...
Waiting for action to complete...
Waiting for action to complete...
Waiting for action to complete...
Waiting for action to complete...
Waiting for action to complete...
Waiting for action to complete...
Waiting for action to complete...
Waiting for action to complete...
Waiting for action to complete...
Waiting for action to complete...
Waiting for action to complete...
Waiting for action to complete...
Waiting for action to complete...
Waiting for action to complete...
Waiting for action to complete...
Waiting for action to complete...
Waiting for action to complete...
Waiting for action to complete...
Waiting for action to complete...
gliserver URL: http://129.81.233.4/cgi-bin/gliserver.pl
gliserver args: cmd=get-script-options&script=classinfo.pl&xml=&language=en&listall
In loadPluginsList()...
Waiting for action to complete...
Getting options for pluginfo.pl...
gliserver URL: http://129.81.233.4/cgi-bin/gliserver.pl
gliserver args: cmd=get-script-options&script=pluginfo.pl&xml=&language=en&listall
SAX exception: The markup in the document preceding the root element must be well-formed.
org.xml.sax.SAXParseException: The markup in the document preceding the root element must be well-formed.
at org.apache.xerces.framework.XMLParser.reportError(XMLParser.java:1196)
at org.apache.xerces.framework.XMLDocumentScanner.reportFatalXMLError(XMLDocumentScanner.java:626)
at org.apache.xerces.framework.XMLDocumentScanner$XMLDeclDispatcher.dispatch(XMLDocumentScanner.java:809)
at org.apache.xerces.framework.XMLDocumentScanner.parseSome(XMLDocumentScanner.java:381)
at org.apache.xerces.framework.XMLParser.parse(XMLParser.java:1081)
at org.greenstone.gatherer.util.XMLTools.parseXML(XMLTools.java:436)
at org.greenstone.gatherer.greenstone.Plugins.parsePluginsListXML(Plugins.java:302)
at org.greenstone.gatherer.greenstone.Plugins.loadPluginsList(Plugins.java:232)
at org.greenstone.gatherer.Gatherer.init(Gatherer.java:441)
at org.greenstone.gatherer.Gatherer.<init>(Gatherer.java:201)
at org.greenstone.gatherer.GathererProg.main(GathererProg.java:77)
java.lang.NullPointerException
at org.greenstone.gatherer.greenstone.Plugins.parsePluginsListXML(Plugins.java:303)
at org.greenstone.gatherer.greenstone.Plugins.loadPluginsList(Plugins.java:232)
at org.greenstone.gatherer.Gatherer.init(Gatherer.java:441)
at org.greenstone.gatherer.Gatherer.<init>(Gatherer.java:201)
at org.greenstone.gatherer.GathererProg.main(GathererProg.java:77)
Waiting for action to complete...
Downloading collection configurations...
gliserver URL: http://129.81.233.4/cgi-bin/gliserver.pl
gliserver args: cmd=download-collection-configurations
Unmapping ABS_ROOT...
Insert Documents in Greenstone Collections in ABS_ROOT at index 0 [Model: FileSystemModel]
Insert Local Filespace in ABS_ROOT at index 1 [Model: FileSystemModel]
Property os.name: Mac OS X
Insert Home Folder (jonahlangenbeck) in ABS_ROOT at index 2 [Model: FileSystemModel]
BaseConfigPane: Main GUI components created.
BaseConfigPane: Main GUI components created.
Loading collection /Users/jonahlangenbeck/.gli/collect/demo/demo.col...
Waiting for action to complete...
Downloading remote collection demo...
gliserver URL: http://129.81.233.4/cgi-bin/gliserver.pl
gliserver args: cmd=download-collection&c=demo
Waiting for action to complete...
Waiting for action to complete...
Waiting for action to complete...
Getting options for buildcol.pl...
gliserver URL: http://129.81.233.4/cgi-bin/gliserver.pl
gliserver args: cmd=get-script-options&script=buildcol.pl&xml=&language=en
SAX exception: The markup in the document preceding the root element must be well-formed.
org.xml.sax.SAXParseException: The markup in the document preceding the root element must be well-formed.
at org.apache.xerces.framework.XMLParser.reportError(XMLParser.java:1196)
at org.apache.xerces.framework.XMLDocumentScanner.reportFatalXMLError(XMLDocumentScanner.java:626)
at org.apache.xerces.framework.XMLDocumentScanner$XMLDeclDispatcher.dispatch(XMLDocumentScanner.java:809)
at org.apache.xerces.framework.XMLDocumentScanner.parseSome(XMLDocumentScanner.java:381)
at org.apache.xerces.framework.XMLParser.parse(XMLParser.java:1081)
at org.greenstone.gatherer.util.XMLTools.parseXML(XMLTools.java:436)
at org.greenstone.gatherer.collection.ScriptOptions.loadArguments(ScriptOptions.java:228)
at org.greenstone.gatherer.collection.ScriptOptions.<init>(ScriptOptions.java:43)
at org.greenstone.gatherer.collection.Collection.<init>(Collection.java:113)
at org.greenstone.gatherer.collection.CollectionManager.loadCollectionInternal(CollectionManager.java:974)
at org.greenstone.gatherer.collection.CollectionManager.access$200(CollectionManager.java:82)
at org.greenstone.gatherer.collection.CollectionManager$LoadCollectionTask.run(CollectionManager.java:856)
Error in ScriptOptions.loadArguments(): java.lang.NullPointerException
java.lang.NullPointerException
at org.greenstone.gatherer.collection.ScriptOptions.loadArguments(ScriptOptions.java:255)
at org.greenstone.gatherer.collection.ScriptOptions.<init>(ScriptOptions.java:43)
at org.greenstone.gatherer.collection.Collection.<init>(Collection.java:113)
at org.greenstone.gatherer.collection.CollectionManager.loadCollectionInternal(CollectionManager.java:974)
at org.greenstone.gatherer.collection.CollectionManager.access$200(CollectionManager.java:82)
at org.greenstone.gatherer.collection.CollectionManager$LoadCollectionTask.run(CollectionManager.java:856)
Waiting for action to complete...
Getting options for import.pl...
gliserver URL: http://129.81.233.4/cgi-bin/gliserver.pl
gliserver args: cmd=get-script-options&script=import.pl&xml=&language=en
SAX exception: The markup in the document preceding the root element must be well-formed.
org.xml.sax.SAXParseException: The markup in the document preceding the root element must be well-formed.
at org.apache.xerces.framework.XMLParser.reportError(XMLParser.java:1196)
at org.apache.xerces.framework.XMLDocumentScanner.reportFatalXMLError(XMLDocumentScanner.java:626)
at org.apache.xerces.framework.XMLDocumentScanner$XMLDeclDispatcher.dispatch(XMLDocumentScanner.java:809)
at org.apache.xerces.framework.XMLDocumentScanner.parseSome(XMLDocumentScanner.java:381)
at org.apache.xerces.framework.XMLParser.parse(XMLParser.java:1081)
at org.greenstone.gatherer.util.XMLTools.parseXML(XMLTools.java:436)
at org.greenstone.gatherer.collection.ScriptOptions.loadArguments(ScriptOptions.java:228)
at org.greenstone.gatherer.collection.ScriptOptions.<init>(ScriptOptions.java:43)
at org.greenstone.gatherer.collection.Collection.<init>(Collection.java:114)
at org.greenstone.gatherer.collection.CollectionManager.loadCollectionInternal(CollectionManager.java:974)
at org.greenstone.gatherer.collection.CollectionManager.access$200(CollectionManager.java:82)
at org.greenstone.gatherer.collection.CollectionManager$LoadCollectionTask.run(CollectionManager.java:856)
Error in ScriptOptions.loadArguments(): java.lang.NullPointerException
java.lang.NullPointerException
at org.greenstone.gatherer.collection.ScriptOptions.loadArguments(ScriptOptions.java:255)
at org.greenstone.gatherer.collection.ScriptOptions.<init>(ScriptOptions.java:43)
at org.greenstone.gatherer.collection.Collection.<init>(Collection.java:114)
at org.greenstone.gatherer.collection.CollectionManager.loadCollectionInternal(CollectionManager.java:974)
at org.greenstone.gatherer.collection.CollectionManager.access$200(CollectionManager.java:82)
at org.greenstone.gatherer.collection.CollectionManager$LoadCollectionTask.run(CollectionManager.java:856)
Skimming metadata.xml file /Users/jonahlangenbeck/.gli/collect/demo/import/b17mie/metadata.xml...
Skimming metadata.xml file /Users/jonahlangenbeck/.gli/collect/demo/import/b18ase/metadata.xml...
Skimming metadata.xml file /Users/jonahlangenbeck/.gli/collect/demo/import/b20cre/metadata.xml...
Skimming metadata.xml file /Users/jonahlangenbeck/.gli/collect/demo/import/b21wae/metadata.xml...
Skimming metadata.xml file /Users/jonahlangenbeck/.gli/collect/demo/import/b22bue/metadata.xml...
Skimming metadata.xml file /Users/jonahlangenbeck/.gli/collect/demo/import/ec158e/metadata.xml...
Skimming metadata.xml file /Users/jonahlangenbeck/.gli/collect/demo/import/ec159e/metadata.xml...
Skimming metadata.xml file /Users/jonahlangenbeck/.gli/collect/demo/import/ec160e/metadata.xml...
Skimming metadata.xml file /Users/jonahlangenbeck/.gli/collect/demo/import/fb33fe/metadata.xml...
Skimming metadata.xml file /Users/jonahlangenbeck/.gli/collect/demo/import/fb34fe/metadata.xml...
Skimming metadata.xml file /Users/jonahlangenbeck/.gli/collect/demo/import/wb34te/metadata.xml...
In loadClassifiersList()...
Waiting for action to complete...
Getting options for classinfo.pl...
gliserver URL: http://129.81.233.4/cgi-bin/gliserver.pl
gliserver args: cmd=get-script-options&script=classinfo.pl&xml=&language=en&listall&collection=demo
In loadPluginsList()...
Waiting for action to complete...
Getting options for pluginfo.pl...
gliserver URL: http://129.81.233.4/cgi-bin/gliserver.pl
gliserver args: cmd=get-script-options&script=pluginfo.pl&xml=&language=en&listall&collection=demo
Initializaing CollectionDesignModule.
LanguageManager: 0 languages parsed.
CollectionMetaManager: 41 metadata parsed.
ClassifierManager: 4 classifiers parsed.
Element at index 0 not in cache: [Classify: null]
Loading arguments for Hierarchy...
Waiting for action to complete...
Getting options for classinfo.pl...
gliserver URL: http://129.81.233.4/cgi-bin/gliserver.pl
gliserver args: cmd=get-script-options&script=classinfo.pl&xml=&language=en&classifier=Hierarchy
Element at index 1 not in cache: [Classify: null]
Already loaded arguments for Hierarchy!
Element at index 2 not in cache: [Classify: null]
Already loaded arguments for Hierarchy!
Element at index 3 not in cache: [Classify: null]
Already loaded arguments for Hierarchy!
IndexOptionManager: 0 levels parsed.
IndexOptionManager: 0 stem options parsed.
IndexManager: 3 indexes parsed.
PluginManager: 5 plugins parsed.
Element at index 0 not in cache: [Plugin: null]
java.lang.NullPointerException
at org.greenstone.gatherer.greenstone.Plugins.getPlugin(Plugins.java:74)
at org.greenstone.gatherer.cdm.Plugin.create(Plugin.java:75)
at org.greenstone.gatherer.cdm.DOMProxyListModel.getElementAt(DOMProxyListModel.java:221)
at org.greenstone.gatherer.cdm.PluginManager.<init>(PluginManager.java:80)
at org.greenstone.gatherer.cdm.CollectionDesignManager.loadDesignDetails(CollectionDesignManager.java:125)
at org.greenstone.gatherer.cdm.CollectionDesignManager.<init>(CollectionDesignManager.java:100)
at org.greenstone.gatherer.collection.CollectionManager.loadCollectionInternal(CollectionManager.java:1013)
at org.greenstone.gatherer.collection.CollectionManager.access$200(CollectionManager.java:82)
at org.greenstone.gatherer.collection.CollectionManager$LoadCollectionTask.run(CollectionManager.java:856)
java.lang.NullPointerException
at org.greenstone.gatherer.greenstone.Plugins.getPlugin(Plugins.java:74)
at org.greenstone.gatherer.cdm.Plugin.create(Plugin.java:75)
at org.greenstone.gatherer.cdm.DOMProxyListModel.getElementAt(DOMProxyListModel.java:221)
at org.greenstone.gatherer.cdm.PluginManager.<init>(PluginManager.java:80)
at org.greenstone.gatherer.cdm.CollectionDesignManager.loadDesignDetails(CollectionDesignManager.java:125)
at org.greenstone.gatherer.cdm.CollectionDesignManager.<init>(CollectionDesignManager.java:100)
at org.greenstone.gatherer.collection.CollectionManager.loadCollectionInternal(CollectionManager.java:1013)
at org.greenstone.gatherer.collection.CollectionManager.access$200(CollectionManager.java:82)
at org.greenstone.gatherer.collection.CollectionManager$LoadCollectionTask.run(CollectionManager.java:856)